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All Journal Jurnal Ilmu Ternak dan Veteriner WARTAZOA Indonesian Bulletin of Animal and Veterinary Sciences Jurnal Ilmu dan Teknologi Peternakan Tropis Animal Production : Indonesian Journal of Animal Production
Anneke Anggraeni
Indonesian Research Institute for Animal Production Jalan Veteran III Ciawi, Bogor 16002, West Java, Indonesia
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Environmental Science Veterinary

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Journal : Jurnal Ilmu Ternak dan Veteriner

 1 
Genetic distance estimation of local swamp buffaloes through morphology analysis approach. Anggraeni, Anneke; Sumantri, C.; Praharani, L.; ., Dudi; Andreas, E.
Indonesian Journal of Animal and Veterinary Sciences Vol 16, No 3 (2011)
Publisher : Indonesian Animal Sciences Society

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (210.11 KB) | DOI: 10.14334/jitv.v16i3.614

Abstract

Information about genetic distances among populations (geographics) of local swamp buffalo is less published. Genetic distance analysis was done among seven local swamp buffalo populations trhough a morphological analysis. Female and male buffaloes were observed for a total number of 905 hds, originating from the Provices of NAD (100 hds), North Sumatera (51 hds), Banten (180 hds), Central Java (203 hds), South Kalimantan (121 hds), NTB (200 hds), dan South Sulawesi (50 hds).  Genetic variation among buffalo populations was calculated by discriminant function of Mahalonobis distance. Genetic distance was estimated by MEGA program. Morphometric measurements of female buffalo in North Sumatera were larger (P < 0,01) than those of buffaloes in Banten, South Kalimantan, NAD and South Sulawesi. Morphometric measurements of male buffalo in South Sulawesi were larger than those of buffaloes in Central Java, Banten, and NAD. Chest width was the highest different morphometric factor (0.969). Buffalo from NTB had the highest similarity (95.0%), followed by buffaloes from North Sumatera (74.51%) and South Sulawesi (74.19%); while the lowest one was from South Sulawesi (38.02%) and Banten (49.44%). Morphological distribution map indicated existence of three local swamp buffalo groups. Grup 1 was presented by buffalo from NTB, distributed in the II and III quadrants. Group 2 was presented by buffaloes from five locations (North Sumatera, Central Java, South Kalimantan, South Sulawesi, and Banten), distrributed in I and II quadrants, and a smaller part distributed in III and IV quadrants. Group 3 was presented by buffaloes from NAD and a smaller part from South Kalimantan and Banten, distributed in IV quadrant. The lowest genetic distance was identified between buffaloes in NAD and South Kalimantan (0.348), while the highest one was between buffloes in Banten and South Kalimantan (1.883). Based on phenogram tree structure, the observed local swamp buffaloes could be classified into 3 cluster, namely: Cluster 1 from South Kalimantan, NAD and Banten; Cluster 2 from South Sulawesi, Central Java and North Sumatera, and Cluster 3 from NTB. Key Words: Swamp Buffalo, Morphology, Discriminant Analysis, Genetic Distance
Diacylglycerol Acyltransferase1 gene polymorphism and its association with milk fatty acid components in Holstein Friesian dairy cattle Asmarasari, Santi Ananda; Sumantri, Cece; Mathius, I Wayan; Anggraeni, Anneke
Indonesian Journal of Animal and Veterinary Sciences Vol 19, No 3 (2014)
Publisher : Indonesian Animal Sciences Society

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14334/jitv.v19i3.1078

Abstract

Diacylglycerol acyltransferase 1 (DGAT1) gene is one of the major genes that has an important role in milk fat synthesis. This research was aimed at to identifying genetic polymorphism of the DGAT1 gene by PCR-RFLP method and its association to milk fatty acid components.  Animals studied were Holstein Friesian (HF) cattle from BBPTU Baturraden (123 cows) and BPPT SP Cikole (36 cows). The length of PCR product of the DGAT1gene was 411 bp. Genotyping resulted in two types of alleles, namely K (411 bp) and A (203 and 208 bp); and two genotypes, namely KK (411 bp) and AK (203, 208 and 411 bp). For both locations, genotype frequency of AK (0.75) was higher than KK (0.25). The allele frequency of K (0.64) was higher than A (0.36). Heterozygosity of HF cattles at both locations was relatively high (Ho>He). The DGAT1 gene of the observed HF cattle was polymorphic. Result showed that there was an association between the DGAT1 polymorphism with unsaturated fatty acids especially in nervonat acid. The AK cows had a significant effect on unsaturated fatty acid content of which having a higher nervonat content (0.05%) (P<0.05) than that of the KK cows (0.03%). From the results, it is concluded that the DGAT1 gene can be functioned as a marker of selection for milk fatty acids. Key Words: DGAT1, PCR-RFLP, Holstein Friesian, Fatty Acids
The influence of follicle numbers per ovary on the quality of oocytes and the day length of forming blastocyte s by in vitro fertilization Sumantri, Cece; Anggraeni, Anneke
Indonesian Journal of Animal and Veterinary Sciences Vol 4, No 4 (1999)
Publisher : Indonesian Animal Sciences Society

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (154.62 KB) | DOI: 10.14334/jitv.v4i4.162

Abstract

The aim of this research is to know the influence of the number of follicles produced per ovary on the quality of oocytes and the day length of developing blastocytes by in vitro fertilization (IVF) at 7-,8-, and 9-days. Material of the research is ovary of Fries Holland dairy cattle gathered from slaughterhouse. A number of 138 ovaries are grouped into four based on the number of follicles per ovary, including group I (≤5 follicles), group II (6-10 follicles), group III (11-20 follicles), and group IV (≥20 follicles). The result showed that the number of follicles per ovary are not significantly (P>0.05) influencing both on oocyte quality and the days length of forming blastocytes at 7-, 8-, and 9-days. Number of oocytes for grade A-B (percentage of the number of oocytes IVF per the number of oocytes obtained per ovary) for group I - IV consecutively is 83.5%, 91.3%, 97.1%, and 91.2%. The number of developing blastocytes (percentage the number of blastocytes per the number of oocytes) for group I - IV at 7-days consecutively is 5.19%, 5.56%, 5.45%, and 6.03%; at 8-days is 15.58%, 12.94 %, 13.64%, and 11.64%; at 9-days is 1818%, 8.96%, 8.18%, and 10.35%.   Key words: Oocytes, IVF, blastocyte
Genetic Polymorphism of the Lactoferrin Gene in Dairy and Beef Cattles at National Artificial Insemination and Embryo Transfer Stations Anggraeni, Anneke; Mumpunie, G.E; Misrianti, R; Sumatri, C
Indonesian Journal of Animal and Veterinary Sciences Vol 17, No 4 (2012)
Publisher : Indonesian Animal Sciences Society

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (387.428 KB) | DOI: 10.14334/jitv.v17i4.691

Abstract

Lactoferrin (LTF) adalah gen pengontrol komponen protein susu dan memiliki karakteristik sebagai antimikrobial.  LTF pada susu berfungsi untuk mencegah diare, sedangkan pada sapi laktasi untuk mencegah mastitis pada ambing. Mempertimbangkan peran penting dari gen LTF, maka perlu dilakukan peningkatan kadar LTF dalam susu melalui seleksi pada taraf DNA. Polymorfisme genetik dari gen LTF diidentifikasi pada sapi perah dan potong dengan metoda Polymerase Chain Reaction - Restricsion Fragment Length Polymorphism (PCR-RFLP), dengan enzim restriksi EcoRI. Genotyping dilakukan pada sapi perah Friesian Holstein (FH) total sejumlah 89 ekor, meliputi dari Balai Inseminasi Buatan Lembang (BIB Lembang) untuk 17 pejantan, Balai Besar IB Singosari (BBIB Singosari) untuk 32 pejantan, dan Balai embrio Transfer Cipelang (BET  Cipelang) pada 40 dara. Genotyping dilakukan pula pada sapi potong dara berasal dari empat bangsa, meliputi Limousin (14 ekor), Angus (5 ekor), Simmental (13 ekor) dan Brahman (5 ekor) dari BET Cipelang. Gen LTF|EcoRI pada sapi perah dan potong pengamatan menghasilkan dua tipe alel, yaitu alel A dan B. Kedua jenis sapi tersebut menghasilkan hanya dua genotipe, yaitu  genotipe AA dan AB, tanpa genotipe BB. Ini dapat menjadi hal yang baik karena genotipe AA dan AB dipertimbangkan berasosiasi dengan ketahan pada mastitis. Nilai-nilai dari heterozygositas observasi (Ho) dari gen ini lebih tinggi dibandingkan heterozigositas ekspektasi (He). Disimpulkan bahwa gen LTF|EcoRI memiliki variasi yang baik pada sapi perah dan sapi potong dari ketiga balai bibit nasional tersebut. Kata Kunci: Polymorfisme genetik, Friesian Holstein, gen Lactoferrin, PCR-RFLP
Co-Authors Asmarasari, Santiananda Arta C Sumatri C. SUMANTRI Cece Sumantri Dudi . E. Andreas Epi Taufik G.E Mumpunie I Wayan Mathius K Diwyanto L. Praharani Mala Nurilmala R Misrianti Santi Ananda Asmarasari Sofjan Iskandar